Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs11021557 | chr11:96103025 | A/G | 7.66E-5 | 483 | 15.97 | 15.78 | 22.45 | KM Plot |
| THCA | rs11021591 | chr11:96172789 | A/T | 0.000199 | 484 | 15.47 | 16.77 | 15.72 | KM Plot |
| THCA | rs11031097 | chr11:4160797 | T/C | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs11031099 | chr11:4160816 | T/C | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs11031100 | chr11:4160852 | C/A | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs11031123 | chr11:4167493 | T/C | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs11049986 | chr12:9433057 | T/C | 0.000203 | 480 | 15.33 | 17.7 | 16.82 | KM Plot |
| THCA | rs110501 | chr4:3225478 | A/G | 9.21E-5 | 490 | 16.87 | 14.63 | 14.85 | KM Plot |
| THCA | rs11050254 | chr12:9480997 | T/C | 0.000188 | 485 | 15.83 | 16.45 | 16.82 | KM Plot |
| THCA | rs11051223 | chr12:31209254 | G/A | 0.000136 | 474 | 15.23 | 17.7 | 15.33 | KM Plot |
| THCA | rs11061221 | chr12:131374010 | C/T | 0.000223 | 483 | 15.97 | 15.63 | 15.9 | KM Plot |
| THCA | rs11066777 | chr12:109478352 | C/T | 7.34E-5 | 481 | 15.93 | 15.17 | 12.35 | KM Plot |
| THCA | rs11073784 | chr15:89049772 | A/T | 0.00012 | 490 | 15.9 | 15.07 | 16.4 | KM Plot |
| THCA | rs11074471 | chr16:20748331 | G/T | 3.38E-5 | 490 | 16.4 | 14.3 | 17.65 | KM Plot |
| THCA | rs11076512 | chr16:50131854 | C/A | 0.000257 | 490 | 13.6 | 16.37 | 15.67 | KM Plot |